Kirill Kryukov

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Kirill Kryukov [1] Kirill Kryukov,

a Russian computer scientist and bioinformaticist at the Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa, Japan, previously affiliated with the Division of Population Genetics, National Institute of Genetics (NIG), Mishima, Shizuoka. His research covers human genetics, DNA sequence alignment and in particular multiple sequence alignment (MSA). He has written various tools and scripts for DNA data and FASTA format [2].

Selected Publications

Kirill Kryukov, Naruya Saitou (2010). MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data. BMC Bioinformatics 11: 142 [8]
Kirill Kryukov, Kenta Sumiyama, Kazuho Ikeo, Takashi Gojobori, Naruya Saitou (2012). A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses. Genome Biology and Evolution, Vol. 4, No. 4

Hideaki Kanzawa-Kiriyama, Kirill Kryukov, Timothy A. Jinam, Kazuyoshi Hosomichi, Aiko Saso, Gen Suwa, Shintaroh Ueda, Minoru Yoneda, Atsushi Tajima, Ken-ichi Shinoda, Ituro Inoue, Naruya Saitou (2016). A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan. Journal of Human Genetics, Vol. 62 [9]
Kirill Kryukov, Tadashi Imanishi (2016). Human Contamination in Public Genome Assemblies. PLoS ONE, Vol. 11, No. 9, e0162424
Satomi Mitsuhashi, Kirill Kryukov, So Nakagawa, Junko S. Takeuchi, Yoshiki Shiraishi, Koichiro Asano, Tadashi Imanishi (2017). A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer. Scientific Reports, Vol. 7
Kirill Kryukov, Mahoko Takahashi Ueda, Tadashi Imanishi, So Nakagawa (2018). Systematic survey of non-retroviral virus-like elements in eukaryotic genomes. Virus Research, 2018, 2
Nobuo Watanabe, Kirill Kryukov, So Nakagawa, Junko S. Takeuchi, Meiko Takeshita, Yukiko Kirimura, Satomi Mitsuhashi, Toru Ishihara, Hiromichi Aoki, Sadaki Inokuchi, Tadashi Imanishi, Shigeaki Inoue (2018). Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis. PLoS ONE, Vol. 13, No. 8, e0202049